Scripts

Version:

0.6.5

Date:

Nov 20, 2023

Developer guidelines for BacterialTyper scripts.

• annotation
• ariba_caller
• bacteriophage
• blast_parser
• BUSCO_caller
• card_trick_caller
• database_generator
• database_user
• edirect_caller
• fastqc_caller
• functions
• genomic_island
• get_descendant
• min_hash_caller
• MLSTar
• multiQC_report
• sampleParser
• spades_assembler
• species_identification_KMA
• trimmomatic_call
• variant_calling
• virulence_resistance