.. _scripts:

Scripts
=======

.. only:: html

    :Version: |version|
    :Date: |today|

Developer guidelines for BacterialTyper scripts.

.. toctree::
   :maxdepth: 1
    
   annotation.rst    
   ariba_caller.rst   
   bacteriophage.rst  
   blast_parser.rst   
   BUSCO_caller.rst   
   card_trick_caller.rst   
   database_generator.rst  
   database_user.rst      
   edirect_caller.rst  
   fastqc_caller.rst   
   functions.rst
   genomic_island.rst
   get_descendant.rst  
   min_hash_caller.rst    
   MLSTar.rst     
   multiQC_report.rst  
   sampleParser.rst       
   spades_assembler.rst
   species_identification_KMA.rst
   trimmomatic_call.rst
   variant_calling.rst
   virulence_resistance.rst