Trimmomatic adapters availableΒΆ
File data/available_Trimmomatic_adapters_info.csv contains information of the adapters available within BacterialTyper provided by Trimmomatic (v0.39).
File |
Adapter Name |
Fasta sequence |
|---|---|---|
NexteraPE-PE |
PrefixNX/1 |
AGATGTGTATAAGAGACAG |
PrefixNX/2 |
AGATGTGTATAAGAGACAG |
|
Trans1 |
TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
|
Trans1_rc |
CTGTCTCTTATACACATCTGACGCTGCCGACGA |
|
Trans2 |
GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG |
|
Trans2_rc |
CTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
|
TruSeq2-PE |
PrefixPE/1 |
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT |
PrefixPE/2 |
CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT |
|
PCR_Primer1 |
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT |
|
PCR_Primer1_rc |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT |
|
PCR_Primer2 |
CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT |
|
PCR_Primer2_rc |
AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG |
|
FlowCell1 |
TTTTTTTTTTAATGATACGGCGACCACCGAGATCTACAC |
|
TruSeq2-PE |
FlowCell2 |
TTTTTTTTTTCAAGCAGAAGACGGCATACGA |
TruSeq2_SE |
AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG |
|
TruSeq2_PE_f |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT |
|
TruSeq2_PE_r |
AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG |
|
TruSeq3-PE-2 |
PrefixPE/1 |
TACACTCTTTCCCTACACGACGCTCTTCCGATCT |
PrefixPE/2 |
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
|
PE1 |
TACACTCTTTCCCTACACGACGCTCTTCCGATCT |
|
PE1_rc |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA |
|
PE2 |
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
|
PE2_rc |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC |
|
TruSeq3-PE |
PrefixPE/1 |
TACACTCTTTCCCTACACGACGCTCTTCCGATCT |
PrefixPE/2 |
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
|
TruSeq3-SE |
TruSeq3_IndexedAdapter |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC |
TruSeq3_UniversalAdapter |
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA |