.. ########################
.. _software-details:
.. ########################

Software Information
********************
      
This is a general guide for the software that we employed along the ``BacterialTyper`` pipeline.

.. contents::

	
.. include:: edirect.rst

.. include:: fastqc.rst

.. include:: iqtree.rst

.. include:: kma.rst

.. include:: MLSTar.rst

.. include:: prokka.rst

.. include:: Phyml.rst

.. include:: spades.rst

.. include:: snippy.rst

.. include:: trimmomatic.rst